- Ageha
- Akujiki
- Aomizuchi
- Aragane Twins
- Area Code 818
- Ariake Seal
- Armored Ninja
- Asian Dawn Boss
- Attack the Logistic Base
- Aya
- B-Type Fighter
- Bakudan Ninja
- Barrel Ninja
- Battle in the Railway
- Bazooka
- Benisuzume
- Bio-Bat
- Bio-Lab
- Biocomputer
- Black Ninja
- Black Tiger
- Black Turtle
- Blue Dragon
- Blue Head
- Blue Lobster
- Blue Ninja
- Body Weapon
- Bojutsu Shi
- Booz
- Bow Ninja
- Bujutsu Ka
- Burning Downtown
- Burning Town
- Chinatown (Revenge of Shinobi)
- Chinatown (Shinobi Legions)
- Construction Site
- Crazy Bull
- Creeping Infantry
- Crush the enemy's ambitions!
- Currl
- Cut off the supply route!
- Deadly Garden
- Defeat the Behind-the-Scene Ninja
- Destroy the Enemy Ninja Group
- Destruction
- Detroit
- Duel Ceremony
- Eater
- Electric Demon
- Enemy Hideout
- Enter the Enemy's Hide Out
- Experimental Subject "X"
- Explosive Ninja Alpha
- Explosive Ninja Beta
- Explosive Ninja Delta
- Explosive Ninja Gamma
- Field
- Fire Ninja
- Flame Ninja
- Flooded City
- Flying Tank
- Four Pillars
- Garzo
- Gecko
- Golden Palace
- Great Oni Mask
- Green Head
- Green Ninja
- Guard Lobster
- Gun
- Gyroplane
- Hakuraku
- Hannya
- Harbor (Cyber Shinobi)
- Harbor (G.G. Shinobi)
- Hayate
- Hazy-Moon
- Heavy Infantry
- Heli Blast
- Hellspawn
- Hibana
- Highway
- Hiruko Ubusuna
- Hisui
- Homura
- Hotsuma
- Hover Ninja
- Hulkless
- Hussom
- Hydra
- Hydra Larva
- Ibaraki Province, Japan
- In the Darkness
- Infantry
- Iron Ball Ninja
- Iron Claw
- Iron Hammer Ninja
- Ivy Mountain
- Jackknife
- Jet Ski
- Jigokumon
- Jimushi
- Jiro Musashi
- Joe Musashi
- Jounin "Kage"
- Jumping Ninja
- Jungle
- Junkie Head
- K-Type Fighter
- KM-99
- Kabe
- Kabuto
- Kagari Ubusuna
- Kan' ei Shrine
- Karasu
- Karla
- Kasumi
- Kazaguruma
- Kazuma
- Ken-Oh
- Kenshi
- Kihyousensha
- Kizami
- Knife Kunoichi
- Kobushi
- Kogatana Ninja
- Komuso
- Kongo Statue
- Kongou
- Kumano Shrine
- Kunoichi (Shinobi III)
- Kurakuda
- Kurenai
- Kurohagane
- Kurumabi
- Lobster
- Lord Ruse
- M-Type Fighter
- Machine Gun Infantry
- Mahyousensha
- Makimono
- Mandara
- Mantis
- Manu
- Mark
- Megazaurus
- Metallikong
- Metamorphomer
- Mijin
- Missile Carrier
- Missile Transport Road
- Mohi
- Momoka
- Monster G
- Moritsune
- Mortar Infantry
- Mt. Fuji
- Musashi's Master
- Musashi Family
- Mysterious Monk
- Nakahara
- Nakatomi Conglomerate
- Nakatomi Factory
- Naoko
- Neo City
- Neo City Boss
- Neo Zeed
- Neo Zeed Marine Stronghold
- New York
- Nightshade
- Nikolai
- Ninja (Shinobi III)
- Ninja Army Corps
- Ninja Master
- Ninjutsu
- Oboro Downfall
- Oboro Lineage
- Oboro Ninja Clan
- Oboro School
- Oboro Village
- Oborokage
- Ochimusha no Namakubi
- Omote
- Onibi
- Onryo-Heri
- Orn
- Orochi
- Owashi
- Pistol Fighter
- Pressing Onward
- Psy Gunner
- Puchimanu
- Purple Phoenix
- Pursue the Terrorists
- Red Dragon (Revenge of Shinobi)
- Red Dragon (Shinobi Legions)
- Red Hopper
- Red Ninja
- Rensha Ninja
- Rocky
- Rocky Mountain
- Rook
- Rushudo
- S-Type Fighter
- Sakyo
- Samurai
- Samurai Mansion
- Sarah Krieger
- Saw Ninja
- Scuba
- Scythe Ninja
- Sea Bat
- Secret Entry
- Sega
- Seiryu
- Sentou-Heri
- Shadow Dancer: The Secret of Shinobi
- Shadow Dancer (1989)
- Shadow Dancer (The Revenge of Shinobi)
- Shadow Master (3D)
- Shadow Master (Shinobi III)
- Shadow Ninja
- Shield Soldier
- Shinobi
- Shinobi: Art of Vengeance
- Shinobi (1987)
- Shinobi (2002)
- Shinobi (Sega Ages)
- Shinobi (series)
- Shinobi 3D
- Shinobi Agency
- Shinobi III: Return of the Ninja Master
- Shinobi Legions
- Shinobi Wiki
- Shirakumo
- Sho
- Shuriken
- Shuriken Ninja
- Sickle Ninja
- Skull
- Sniper
- Spark Eye
- Spider
- Stealth Dash
- Steam Locomotive
- Stop the sabotage!
- Surprise attack on the underground organization!
- Taijutsu
- Talismans
- Tareisu
- Tate
- Tessai
- The Capital
- The Cyber Shinobi
- The Final Confrontation
- The G.G. Shinobi
- The G.G. Shinobi II: The Silent Fury
- The Journey Begins
- The Military Base
- The Revenge of Shinobi
- The Revenge of Shinobi (GBA)
- The Statue of Liberty
- Tokyo
- Tokyo (The Revenge of Shinobi)
- Tomoe
- Traps
- Ubusuna Clan
- Ukyo
- Undersea Cave
- Union Lizard
- Union Lizard (stage)
- Union Lizard Boss
- Valley
- Wall Run
- Water Ninja
- Waterfall
- White Lion
- White Phoenix
- Won
- Wood Ninja
- Woodland
- Yaiba
- Yamato
- Yang
- Yatsurao
- Yellow Ninja
- Yin
- Yoroi
- Zeed
- Zeed's Resurrection
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